Saad Jbabdi

• Concurrent white matter bundles and grey matter networks using independent component analysis.

  O'Muircheartaigh J. and Jbabdi S., (2017), Neuroimage

• Image Processing and Quality Control for the first 10,000 Brain Imaging Datasets from UK Biobank

  Alfaro Almagro F. et al, (2017), biorxiv

• Resting connectivity predicts task activation in pre-surgical populations.

  Parker Jones O. et al, (2017), Neuroimage Clin, 13, 378 - 385

• Perceptually relevant remapping of human somatotopy in 24 hours.

  Kolasinski J. et al, (2016), Elife, 5

• The extreme capsule fiber complex in humans and macaque monkeys: a comparative diffusion MRI tractography study.

  Mars RB. et al, (2016), Brain Struct Funct, 221, 4059 - 4071

• Multimodal population brain imaging in the UK Biobank prospective epidemiological study.

  Miller KL. et al, (2016), Nat Neurosci, 19, 1523 - 1536

• Dentatorubrothalamic tract localization with postmortem MR diffusion tractography compared to histological 3D reconstruction.

  Mollink J. et al, (2016), Brain Struct Funct, 221, 3487 - 3501

• Revealing the neural fingerprints of a missing hand.

  Kikkert S. et al, (2016), Elife, 5

• Fusion in diffusion MRI for improved fibre orientation estimation: An application to the 3T and 7T data of the Human Connectome Project.

  Sotiropoulos SN. et al, (2016), Neuroimage, 134, 396 - 409

• Using Diffusion Tractography to Predict Cortical Connection Strength and Distance: A Quantitative Comparison with Tracers in the Monkey.

  Donahue CJ. et al, (2016), J Neurosci, 36, 6758 - 6770

• Task-free MRI predicts individual differences in brain activity during task performance.

  Tavor I. et al, (2016), Science, 352, 216 - 220

• Unmasking Latent Inhibitory Connections in Human Cortex to Reveal Dormant Cortical Memories.

  Barron HC. et al, (2016), Neuron, 90, 191 - 203

• Anesthesia-induced Suppression of Human Dorsal Anterior Insula Responsivity at Loss of Volitional Behavioral Response.

  Warnaby CE. et al, (2016), Anesthesiology, 124, 766 - 778

• Tractography Study of Deep Brain Stimulation of the Anterior Cingulate Cortex in Chronic Pain: Key to Improve the Targeting.

  Boccard SG. et al, (2016), World Neurosurg, 86

• Investigating the Stability of Fine-Grain Digit Somatotopy in Individual Human Participants.

  Kolasinski J. et al, (2016), J Neurosci, 36, 1113 - 1127

• A probabilistic atlas of the cerebellar white matter.

  van Baarsen KM. et al, (2016), Neuroimage, 124, 724 - 732

• High resolution whole brain diffusion imaging at 7T for the Human Connectome Project.

  Vu AT. et al, (2015), Neuroimage, 122, 318 - 331

• Thalamo-Cortical Disruption Contributes to Short-Term Memory Deficits in Patients with Medial Temporal Lobe Damage.

  Voets NL. et al, (2015), Cereb Cortex, 25, 4584 - 4595

• Measuring macroscopic brain connections in vivo.

  Jbabdi S. et al, (2015), Nat Neurosci, 18, 1546 - 1555

• Connectivity-based segmentation of the periaqueductal gray matter in human with brainstem optimized diffusion MRI.

  Ezra M. et al, (2015), Hum Brain Mapp, 36, 3459 - 3471

• Connectivity-based segmentation of the periaqueductal gray matter in human with brainstem optimized diffusion MRI

  Ezra M. et al, (2015), Human Brain Mapping, 36, 3459 - 3471

• Diffusion tensor imaging of dolphin brains reveals direct auditory pathway to temporal lobe.

  Berns GS. et al, (2015), Proc Biol Sci, 282

• A model for extra-axonal diffusion spectra with frequency-dependent restriction.

  Lam WW. et al, (2015), Magn Reson Med, 73, 2306 - 2320

• Heritability of fractional anisotropy in human white matter: a comparison of Human Connectome Project and ENIGMA-DTI data.

  Kochunov P. et al, (2015), Neuroimage, 111, 300 - 311

• Tract-Based Spatial Statistics and Other Approaches for Cross-Subject Comparison of Local Diffusion MRI Parameters

  Smith SM. et al, (2015), Brain Mapping: An Encyclopedic Reference, 1, 437 - 464

• Correction: Accelerating Fibre Orientation Estimation from Diffusion Weighted Magnetic Resonance Imaging Using GPUs.

  Hernández M. et al, (2015), PLoS One, 10

• Improving diffusion-weighted imaging of post-mortem human brains: SSFP at 7 T.

  Foxley S. et al, (2014), Neuroimage, 102 Pt 2, 579 - 589

• MSM: a new flexible framework for Multimodal Surface Matching.

  Robinson EC. et al, (2014), Neuroimage, 100, 414 - 426

• Differential structural and resting state connectivity between insular subdivisions and other pain-related brain regions.

  Wiech K. et al, (2014), Pain, 155, 2047 - 2055

• Differential structural and resting state connectivity between insular subdivisions and other pain-related brain regions

  Wiech K. et al, (2014), Pain, 155, 2047 - 2055

• fMRI and sleep correlates of the age-related impairment in motor memory consolidation.

  Fogel SM. et al, (2014), Hum Brain Mapp, 35, 3625 - 3645

• Connectivity-based functional analysis of dopamine release in the striatum using diffusion-weighted MRI and positron emission tomography.

  Tziortzi AC. et al, (2014), Cereb Cortex, 24, 1165 - 1177

• Comprehensive morphometry of subcortical grey matter structures in early-stage Parkinson's disease.

  Menke RA. et al, (2014), Hum Brain Mapp, 35, 1681 - 1690

• fMRI and sleep correlates of the age-related impairment in motor memory consolidation

  Fogel SM. et al, (2014), Human Brain Mapping, 35, 3625 - 3645

• Comprehensive morphometry of subcortical grey matter structures in early-stage Parkinson's disease

  Menke RAL. et al, (2014), Human Brain Mapping, 35, 1681 - 1690

• Motor skill learning induces changes in white matter microstructure and myelination.

  Sampaio-Baptista C. et al, (2013), J Neurosci, 33, 19499 - 19503

• Long-range connectomics.

  Jbabdi S. and Behrens TE., (2013), Ann N Y Acad Sci, 1305, 83 - 93

• Long-range connectomics

  Jbabdi S. and Behrens TE., (2013), Annals of the New York Academy of Sciences, 1305, 83 - 93

• Effects of image reconstruction on fiber orientation mapping from multichannel diffusion MRI: Reducing the noise floor using SENSE

  Sotiropoulos SN. et al, (2013), Magnetic Resonance in Medicine, 70, 1682 - 1689

• Effects of image reconstruction on fiber orientation mapping from multichannel diffusion MRI: reducing the noise floor using SENSE.

  Sotiropoulos SN. et al, (2013), Magn Reson Med, 70, 1682 - 1689

• MR Diffusion Tractography

  Behrens TEJ. et al, (2013), 429 - 451

• Mapping Connections in Humans and Non-Human Primates. Aspirations and Challenges for Diffusion Imaging.

  Van Essen DC. et al, (2013), 337 - 358

• Imaging Structure and Function

  Jbabdi S., (2013), 585 - 605

• Cross-Subject Comparison of Local Diffusion MRI Parameters

  Smith SM. et al, (2013), 209 - 239

• Slow-wave activity saturation and thalamocortical isolation during propofol anesthesia in humans.

  Ní Mhuircheartaigh R. et al, (2013), Sci Transl Med, 5

• The minimal preprocessing pipelines for the Human Connectome Project.

  Glasser MF. et al, (2013), Neuroimage, 80, 105 - 124

• The CONNECT project: Combining macro- and micro-structure.

  Assaf Y. et al, (2013), Neuroimage, 80, 273 - 282

• Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project

  Uǧurbil K. et al, (2013), NeuroImage, 80, 80 - 104

• Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project.

  Uğurbil K. et al, (2013), Neuroimage, 80, 80 - 104

• Advances in diffusion MRI acquisition and processing in the Human Connectome Project

  Sotiropoulos SN. et al, (2013), NeuroImage, 80, 125 - 143

• Advances in diffusion MRI acquisition and processing in the Human Connectome Project.

  Sotiropoulos SN. et al, (2013), Neuroimage, 80, 125 - 143

• The minimal preprocessing pipelines for the Human Connectome Project

  Glasser MF. et al, (2013), NeuroImage, 80, 105 - 124

• Brain systems for probabilistic and dynamic prediction: computational specificity and integration.

  O'Reilly JX. et al, (2013), PLoS Biol, 11

• Causal effect of disconnection lesions on interhemispheric functional connectivity in rhesus monkeys.

  O'Reilly JX. et al, (2013), Proc Natl Acad Sci U S A, 110, 13982 - 13987

• The temporoparietal fiber intersection area and wernicke perpendicular fasciculus

  Bartsch AJ. et al, (2013), Neurosurgery, 73

• The temporoparietal fiber intersection area and wernicke perpendicular fasciculus.

  Bartsch AJ. et al, (2013), Neurosurgery, 73, E381 - E382

• Spatially constrained hierarchical parcellation of the brain with resting-state fMRI.

  Blumensath T. et al, (2013), Neuroimage, 76, 313 - 324

• The organization of dorsal frontal cortex in humans and macaques.

  Sallet J. et al, (2013), J Neurosci, 33, 12255 - 12274

• RubiX: combining spatial resolutions for Bayesian inference of crossing fibers in diffusion MRI.

  Sotiropoulos SN. et al, (2013), IEEE Trans Med Imaging, 32, 969 - 982

• Imaging human connectomes at the macroscale.

  Craddock RC. et al, (2013), Nat Methods, 10, 524 - 539

• The topographic connectome.

  Jbabdi S. et al, (2013), Curr Opin Neurobiol, 23, 207 - 215

• The topographic connectome

  Jbabdi S. et al, (2013), Current Opinion in Neurobiology, 23, 207 - 215

• Human and monkey ventral prefrontal fibers use the same organizational principles to reach their targets: tracing versus tractography.

  Jbabdi S. et al, (2013), J Neurosci, 33, 3190 - 3201

• Multimodal surface matching: fast and generalisable cortical registration using discrete optimisation.

  Robinson EC. et al, (2013), Inf Process Med Imaging, 23, 475 - 486

• Multimodal surface matching: fast and generalisable cortical registration using discrete optimisation.

  Robinson EC. et al, (2013), Information processing in medical imaging : proceedings of the ... conference, 23, 475 - 486

• Accelerating fibre orientation estimation from diffusion weighted magnetic resonance imaging using GPUs.

  Hernández M. et al, (2013), PLoS One, 8

• Model-based analysis of multishell diffusion MR data for tractography: How to get over fitting problems

  Jbabdi S. et al, (2012), Magnetic Resonance in Medicine, 68, 1846 - 1855

• Model-based analysis of multishell diffusion MR data for tractography: how to get over fitting problems.

  Jbabdi S. et al, (2012), Magn Reson Med, 68, 1846 - 1855

• Continuity,divergence,and the evolution of brain language pathways

  Rilling J. et al, (2012), Frontiers in Evolutionary Neuroscience, 3

• Probabilistic tractography recovers a rostrocaudal trajectory of connectivity variability in the human insular cortex.

  Cerliani L. et al, (2012), Hum Brain Mapp, 33, 2005 - 2034

• Age-related differences in cerebral activation for motor sequence learning are correlated with sleep spindles

  Fogel S. et al, (2012), JOURNAL OF SLEEP RESEARCH, 21, 5 - 5

• Connectivity-based subdivisions of the human right "temporoparietal junction area": evidence for different areas participating in different cortical networks.

  Mars RB. et al, (2012), Cereb Cortex, 22, 1894 - 1903

• Relating brain damage to brain plasticity in patients with multiple sclerosis.

  Tomassini V. et al, (2012), Neurorehabil Neural Repair, 26, 581 - 593

• Ball and rackets: Inferring fiber fanning from diffusion-weighted MRI.

  Sotiropoulos SN. et al, (2012), Neuroimage, 60, 1412 - 1425

• How can a Bayesian approach inform neuroscience?

  O'Reilly JX. et al, (2012), Eur J Neurosci, 35, 1169 - 1179

• Diffusion tractography of post-mortem human brains: Optimization and comparison of spin echo and steady-state free precession techniques

  Miller KL. et al, (2012), NeuroImage, 59, 2284 - 2297

• Diffusion tractography of post-mortem human brains: optimization and comparison of spin echo and steady-state free precession techniques.

  Miller KL. et al, (2012), Neuroimage, 59, 2284 - 2297

• Specialization: the connections have it.

  Jbabdi S. and Behrens TE., (2012), Nat Neurosci, 15, 171 - 172

• A brain network processing the age of faces.

  Homola GA. et al, (2012), PLoS One, 7

• Social network size affects neural circuits in macaques.

  Sallet J. et al, (2011), Science, 334, 697 - 700

• Acid-sensing ion channel 1 blockade preserves brain microstructural integrity in patients with multiple sclerosis

  de Ruiter MB. et al, (2011), MULTIPLE SCLEROSIS JOURNAL, 17, S205 - S205

• Motor practice promotes increased activity in brain regions structurally disconnected after subcortical stroke.

  Bosnell RA. et al, (2011), Neurorehabil Neural Repair, 25, 607 - 616

• Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner.

  Miller KL. et al, (2011), Neuroimage, 57, 167 - 181

• DTI measures in crossing-fibre areas: increased diffusion anisotropy reveals early white matter alteration in MCI and mild Alzheimer's disease.

  Douaud G. et al, (2011), Neuroimage, 55, 880 - 890

• Diffusion-weighted imaging tractography-based parcellation of the human parietal cortex and comparison with human and macaque resting-state functional connectivity.

  Mars RB. et al, (2011), J Neurosci, 31, 4087 - 4100

• Structural and functional bases for individual differences in motor learning.

  Tomassini V. et al, (2011), Hum Brain Mapp, 32, 494 - 508

• Tractography: where do we go from here?

  Jbabdi S. and Johansen-Berg H., (2011), Brain Connect, 1, 169 - 183

• Probabilistic tractography recovers a rostrocaudal trajectory of connectivity variability in the human insular cortex

  Cerliani L. et al, (2011), Human Brain Mapping

• Preservation of motor skill learning in patients with multiple sclerosis.

  Tomassini V. et al, (2011), Mult Scler, 17, 103 - 115

• Network analysis detects changes in the contralesional hemisphere following stroke.

  Crofts JJ. et al, (2011), Neuroimage, 54, 161 - 169

• DTI measures in crossing-fibre areas: Increased diffusion anisotropy reveals early white matter alteration in MCI and mild Alzheimer's disease

  Douaud G. et al, (2011), NeuroImage

• Continuity, divergence, and the evolution of brain language pathways.

  Rilling JK. et al, (2011), Front Evol Neurosci, 3

• Automated probabilistic reconstruction of white-matter pathways in health and disease using an atlas of the underlying anatomy.

  Yendiki A. et al, (2011), Front Neuroinform, 5

• Connectivity-based parcellation of grey matter

  behrens T. et al, (2010), Diffusion MRI

• Connectivity-based segmentation of the substantia nigra in human and its implications in Parkinson's disease.

  Menke RA. et al, (2010), Neuroimage, 52, 1175 - 1180

• Cortical and subcortical connectivity changes during decreasing levels of consciousness in humans: a functional magnetic resonance imaging study using propofol.

  Mhuircheartaigh RN. et al, (2010), J Neurosci, 30, 9095 - 9102

• Connectivity-based segmentation of the substantia Nigra in human and its implications in Parkinson's disease.

  Menke RA. et al, (2010), Neuroimage

• Anatomical and functional connectivity of cytoarchitectonic areas within the human parietal operculum.

  Eickhoff SB. et al, (2010), J Neurosci, 30, 6409 - 6421

• Crossing fibres in tract-based spatial statistics.

  Jbabdi S. et al, (2010), Neuroimage, 49, 249 - 256

• MR diffusion tractography

  Behrens TEJ. and Jbabdi S., (2009), Diffusion MRI, 333 - 351

• Imaging structure and function

  Jbabdi S., (2009), Diffusion MRI, 461 - 480

• Structural correlates of preterm birth in the adolescent brain.

  Nagy Z. et al, (2009), Pediatrics, 124, e964 - e972

• Integration of measures of functional and structural MRI

  Johansen-Berg H. et al, (2009), Neuromethods, 41, 785 - 809

• Functional correlates of motor learning in multiple sclerosis

  Tomassini V. et al, (2009), MULTIPLE SCLEROSIS, 15, S96 - S96

• MRI characteristics of the substantia nigra in Parkinson's disease: a combined quantitative T1 and DTI study.

  Menke RA. et al, (2009), Neuroimage, 47, 435 - 441

• In vivo evidence for the selective subcortical degeneration in Huntington's disease.

  Douaud G. et al, (2009), Neuroimage, 46, 958 - 966

• High resolution diffusion-weighted imaging in fixed human brain using diffusion-weighted steady state free precession.

  McNab JA. et al, (2009), Neuroimage, 46, 775 - 785

• Bayesian analysis of neuroimaging data in FSL.

  Woolrich MW. et al, (2009), Neuroimage, 45, S173 - S186

• Multiple-subjects connectivity-based parcellation using hierarchical Dirichlet process mixture models.

  Jbabdi S. et al, (2009), Neuroimage, 44, 373 - 384

• Determination of the human brainstem respiratory control network and its cortical connections in vivo using functional and structural imaging.

  Pattinson KT. et al, (2009), Neuroimage, 44, 295 - 305

• Bayesian model order selection for nonlinear system function expansions.

  Mitsis GD. and Jbabdi S., (2008), Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, 2165 - 2168

• Changes in connectivity after visual cortical brain damage underlie altered visual function.

  Bridge H. et al, (2008), Brain, 131, 1433 - 1444

• Accurate anisotropic fast marching for diffusion-based geodesic tractography

  Jbabdi S. et al, (2008), International Journal of Biomedical Imaging, 2008

• Bayesian model order selection for nonlinear system function expansions.

  Mitsis GD. and Jbabdi S., (2008), Conf Proc IEEE Eng Med Biol Soc, 2008, 2165 - 2168

• Accurate anisotropic fast marching for diffusion-based geodesic tractography.

  Jbabdi S. et al, (2008), Int J Biomed Imaging, 2008

• Diffusion-weighted imaging tractography-based parcellation of the human lateral premotor cortex identifies dorsal and ventral subregions with anatomical and functional specializations.

  Tomassini V. et al, (2007), J Neurosci, 27, 10259 - 10269

• A Bayesian framework for global tractography.

  Jbabdi S. et al, (2007), Neuroimage, 37, 116 - 129

• Symmetrical event-related EEG/fMRI information fusion in a variational Bayesian framework.

  Daunizeau J. et al, (2007), Neuroimage, 36, 69 - 87

• Text comprehension, cognitive resources and aging

  Chesneau S. et al, (2007), Psychologie et NeuroPsychiatrie du Vieillissement, 5, 47 - 64

• [Text comprehension, cognitive resources and aging].

  Chesneau S. et al, (2007), Psychol Neuropsychiatr Vieil, 5, 47 - 64

• Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?

  Behrens TE. et al, (2007), Neuroimage, 34, 144 - 155

• Preoperative estimation of residual volume for WHO grade II glioma resected with intraoperative functional mapping.

  Mandonnet E. et al, (2007), Neuro Oncol, 9, 63 - 69

• An alternative route to motion discrimination

  Bridge H. et al, (2007), PERCEPTION, 36, 63 - 64

• Identification of large-scale networks in the brain using fMRI.

  Bellec P. et al, (2006), Neuroimage, 29, 1231 - 1243

• Simulation of anisotropic growth of low-grade gliomas using diffusion tensor imaging.

  Jbabdi S. et al, (2005), Magn Reson Med, 54, 616 - 624

• Investigating the Stability of Fine-Grain Digit Somatotopy in Individual Human Participants

  Kolasinski J. et al, Journal of Neuroscience

Key Publications

• Task-free MRI predicts individual differences in brain activity during task performance.

  Tavor I. et al, (2016), Science, 352, 216 - 220

• Human and monkey ventral prefrontal fibers use the same organizational principles to reach their targets: tracing versus tractography.

  Jbabdi S. et al, (2013), J Neurosci, 33, 3190 - 3201

• The topographic connectome.

  Jbabdi S. et al, (2013), Curr Opin Neurobiol, 23, 207 - 215

• Model-based analysis of multishell diffusion MR data for tractography: how to get over fitting problems.

  Jbabdi S. et al, (2012), Magn Reson Med, 68, 1846 - 1855

• Tractography: where do we go from here?

  Jbabdi S. and Johansen-Berg H., (2011), Brain Connect, 1, 169 - 183

Recent Publications

• Concurrent white matter bundles and grey matter networks using independent component analysis.

  O'Muircheartaigh J. and Jbabdi S., (2017), Neuroimage

• Image Processing and Quality Control for the first 10,000 Brain Imaging Datasets from UK Biobank

  Alfaro Almagro F. et al, (2017), biorxiv

• Resting connectivity predicts task activation in pre-surgical populations.

  Parker Jones O. et al, (2017), Neuroimage Clin, 13, 378 - 385

• Perceptually relevant remapping of human somatotopy in 24 hours.

  Kolasinski J. et al, (2016), Elife, 5

• The extreme capsule fiber complex in humans and macaque monkeys: a comparative diffusion MRI tractography study.

  Mars RB. et al, (2016), Brain Struct Funct, 221, 4059 - 4071